##FastQC	0.10.0
>>Basic Statistics	pass
#Measure	Value	
Filename	lane4_Index12_2.fq	
File type	Conventional base calls	
Encoding	Illumina 1.5	
Total Sequences	20719679	
Filtered Sequences	0	
Sequence length	90	
%GC	49	
>>END_MODULE
>>Per base sequence quality	pass
#Base	Mean	Median	Lower Quartile	Upper Quartile	10th Percentile	90th Percentile
1	32.035411938572985	33.0	31.0	34.0	30.0	34.0
2	32.187512123136656	33.0	31.0	34.0	30.0	34.0
3	32.25957289203178	34.0	31.0	34.0	30.0	34.0
4	35.73902303216184	37.0	35.0	37.0	33.0	37.0
5	35.721066045473	37.0	35.0	37.0	33.0	37.0
6	35.68129462816485	37.0	35.0	37.0	33.0	37.0
7	35.69670611209759	37.0	35.0	37.0	33.0	37.0
8	35.67421942202869	37.0	35.0	37.0	33.0	37.0
9	37.33838608213959	39.0	37.0	39.0	34.0	39.0
10-14	37.54859962840158	39.2	37.2	39.4	33.8	39.4
15-19	38.50282210453164	40.0	38.0	41.0	34.0	41.0
20-24	38.2980251190185	40.0	38.0	41.0	33.4	41.0
25-29	37.98755816632101	40.0	37.8	41.0	33.0	41.0
30-34	37.75879995052047	40.0	37.2	41.0	32.4	41.0
35-39	37.798417041113424	40.0	37.0	41.0	32.4	41.0
40-44	37.44896326820507	39.6	36.6	41.0	31.2	41.0
45-49	36.972656574457545	39.0	35.4	40.8	30.6	41.0
50-54	36.61154353790906	38.8	35.0	40.0	30.4	41.0
55-59	36.28944801702768	38.2	35.0	40.2	30.0	41.0
60-64	35.46928498264862	37.0	34.0	40.0	28.8	41.0
65-69	34.547643136749365	35.6	33.6	39.0	27.8	40.8
70-74	33.571286118863135	35.0	33.0	37.6	26.2	39.8
75-79	32.549010628977406	35.0	32.0	36.2	25.6	38.8
80-84	31.464461886692355	34.4	31.2	35.2	23.6	37.0
85-89	30.232385057702874	34.0	30.6	35.0	14.4	36.0
90	29.15725658684191	34.0	30.0	35.0	2.0	35.0
>>END_MODULE
>>Per sequence quality scores	pass
#Quality	Count
9	1.0
10	233.0
11	2251.0
12	7067.0
13	13944.0
14	22297.0
15	30732.0
16	38917.0
17	45797.0
18	52856.0
19	61008.0
20	71155.0
21	82947.0
22	96869.0
23	114059.0
24	135548.0
25	160920.0
26	193487.0
27	233010.0
28	284118.0
29	346915.0
30	425333.0
31	530624.0
32	673071.0
33	879116.0
34	1204104.0
35	1755152.0
36	2719430.0
37	3933441.0
38	4325646.0
39	2238556.0
40	41075.0
>>END_MODULE
>>Per base sequence content	fail
#Base	G	A	T	C
1	25.12908621798629	12.009215972892244	10.497170347088872	52.3645274620326
2	21.530586350597968	19.07475094114057	35.62624061194568	23.768422096315774
3	25.44408244382621	21.320124020417204	22.5029549650341	30.732838570722485
4	27.546896109454057	27.363031172682916	19.09769916774052	25.99237355012251
5	29.12576713482663	29.68505871588588	21.659934609681375	19.52923953960611
6	24.1987254206084	32.62774777425471	21.90320251127992	21.270324293856973
7	21.365480167815804	18.660534081369715	37.585106275135075	22.388879475679406
8	21.580130133645355	22.16154403311966	29.10975099673471	27.148574836500273
9	21.4947579700591	21.00856987193872	31.638969364062998	25.857702793939186
10-14	24.492788632603936	26.279783362150855	24.658241470951754	24.569186534293454
15-19	24.832084935497466	25.159580248877173	25.15049342707018	24.857841388555187
20-24	24.59748744348711	25.40866591413164	25.511356374064253	24.482490268316994
25-29	24.477563794136653	25.44924001438392	25.421409852946685	24.65178633853274
30-34	24.505448409437246	25.39057886511665	25.377336784820393	24.72663594062571
35-39	24.503672855570674	25.553187578736264	25.338754950558677	24.604384615134382
40-44	24.48495847695043	25.36219664947388	25.50401568006632	24.64882919350937
45-49	24.41656144903026	25.434441690123442	25.418872375833534	24.730124485012762
50-54	24.445858179146384	25.53013748208	25.45296220084998	24.571042137923634
55-59	24.46765151347029	25.467115165517107	25.392845216957877	24.672388104054725
60-64	24.37339693132459	25.49371073996624	25.509203406471524	24.623688922237644
65-69	24.402658731899347	25.61589831879144	25.47635941400803	24.50508353530118
70-74	24.4634244355531	25.553616144735948	25.374078529148775	24.608880890562176
75-79	24.45411362207339	25.492799872388506	25.458324341906213	24.594762163631895
80-84	24.39612630959511	25.637518775040324	25.451393744023104	24.514961171341458
85-89	24.51210850966264	25.601916515867153	25.361545983596972	24.52442899087324
90	24.23977509832836	25.70761402317736	25.555551426246865	24.497059452247417
>>END_MODULE
>>Per base GC content	fail
#Base	%GC
1	77.49361368001888
2	45.299008446913746
3	56.1769210145487
4	53.53926965957656
5	48.65500667443274
6	45.46904971446537
7	43.75435964349521
8	48.72870497014563
9	47.35246076399828
10-14	49.06197516689739
15-19	49.68992632405265
20-24	49.079977711804105
25-29	49.129350132669394
30-34	49.232084350062955
35-39	49.108057470705056
40-44	49.1337876704598
45-49	49.14668593404302
50-54	49.01690031707002
55-59	49.14003961752502
60-64	48.99708585356223
65-69	48.907742267200526
70-74	49.07230532611527
75-79	49.048875785705285
80-84	48.911087480936565
85-89	49.03653750053588
90	48.73683455057577
>>END_MODULE
>>Per sequence GC content	pass
#GC Content	Count
0	6.0
1	4.5
2	3.5
3	6.0
4	9.0
5	12.5
6	18.0
7	26.0
8	36.5
9	50.5
10	59.0
11	87.5
12	139.0
13	225.0
14	358.5
15	601.5
16	1082.5
17	1858.0
18	3095.0
19	5426.0
20	6987.0
21	9539.5
22	15983.0
23	25885.0
24	39896.0
25	58858.0
26	83467.0
27	114804.5
28	149798.0
29	187011.5
30	206922.0
31	226530.5
32	268947.0
33	316265.5
34	367620.5
35	418111.5
36	467531.5
37	524840.5
38	575972.0
39	616975.0
40	638382.0
41	650995.5
42	677552.0
43	703332.0
44	717563.5
45	720944.0
46	720094.5
47	714580.0
48	712965.5
49	712900.5
50	710771.0
51	703443.5
52	695000.5
53	684359.0
54	677388.0
55	677184.0
56	668495.0
57	653642.5
58	631727.0
59	604144.5
60	589555.0
61	573449.5
62	538308.5
63	495546.5
64	445406.5
65	392992.5
66	339875.0
67	284467.0
68	233700.5
69	186710.5
70	162196.0
71	141595.0
72	103848.5
73	72744.5
74	47210.5
75	27785.5
76	15234.5
77	7650.5
78	3377.5
79	1373.0
80	759.0
81	534.5
82	218.0
83	103.0
84	61.5
85	30.0
86	16.5
87	16.0
88	11.0
89	4.5
90	3.0
91	4.0
92	3.0
93	2.0
94	3.0
95	2.0
96	1.0
97	1.0
98	0.5
99	0.5
100	1.0
>>END_MODULE
>>Per base N content	pass
#Base	N-Count
1	0.0
2	0.0173361759127639
3	0.038263141045766204
4	0.04783857896640194
5	0.052138838637413254
6	0.004831155926691721
7	0.01983138831446182
8	0.015849666396858756
9	0.013513722871864956
10-14	0.01895203106187118
15-19	0.00851461067519434
20-24	0.004388098869678435
25-29	0.002083043854106041
30-34	0.004247170045443272
35-39	0.001693076422660795
40-44	8.436424135721408E-4
45-49	0.003470130980311037
50-54	4.411265251744489E-4
55-59	0.0032162660435038595
60-64	9.585090579829929E-4
65-69	0.004196010951714069
70-74	0.004348522966982259
75-79	0.00866905322230137
80-84	0.006505892296883557
85-89	0.006430601555168881
90	0.0027992711663148836
>>END_MODULE
>>Sequence Length Distribution	pass
#Length	Count
90	2.0719679E7
>>END_MODULE
>>Sequence Duplication Levels	fail
#Total Duplicate Percentage	54.20332073875382
#Duplication Level	Relative count
1	100.0
2	30.821148537299646
3	16.128016458659165
4	10.21213616181549
5	7.009625376565305
6	5.127586098311098
7	3.886888704615352
8	3.135332584576305
9	2.581112429016784
10++	31.030030755019997
>>END_MODULE
>>Overrepresented sequences	pass
>>END_MODULE
>>Kmer Content	warn
#Sequence	Count	Obs/Exp Overall	Obs/Exp Max	Max Obs/Exp Position
CCAGG	4391635	2.6310408	5.486674	1
CCTGG	4366020	2.6003864	6.1662617	1
CTTCT	4551520	2.5143058	5.6298056	1
CTGGA	4155100	2.4427702	8.906652	1
TCCAG	4091035	2.3604198	5.7264295	2
CTGCT	4037420	2.3158522	5.0798845	1
CTCCT	4109150	2.3132033	8.039662	1
CTGGG	3758455	2.2809017	8.531608	1
CAGGA	3804880	2.2500453	5.5968533	1
CTTCA	3954815	2.1975405	5.7368026	1
CCCAG	3708845	2.1806953	7.456327	1
CTCCA	3832255	2.1700284	8.178086	1
CAGAA	3637605	2.083866	5.075149	1
CTCTG	3532730	2.0263636	6.360404	1
CTGGC	3179710	1.8938243	5.6098146	1
TGGAA	3221235	1.8692719	5.2327175	2
CTGAA	3229625	1.8393192	5.564297	1
CTCAG	3006040	1.7344062	6.2377706	1
CTTTG	3023500	1.7018317	5.102535	1
CTGGT	2859420	1.6712056	5.260777	1
CTTGG	2806100	1.6400424	5.4038224	1
CTCCC	2708285	1.5536616	5.2369757	1
>>END_MODULE
